Tarawa-subset command line

chmod a+rwx 4SM.2.06 leg xl p .ps* .gmt*

#0 Create a georeferenced PCIDSK database tarawa-subset.pix
#Prepare the image: RUN THIS SCRIPT IN SEQUENCE
#FIRST: enable -MakePIX...     to create tarawa-subset.pix
#THEN:     enable -Import...     to import from yourimage.pix
#THEN:     enable -MakeLand...    to make land in channel_4
#THEN:     enable -Recode...    etc
#ETC
#THEN      enable -Deglint... (-model is there only to provide smoothing parameters)
#THEN:     enable -Recode...    etc
nice -20 ./4SM.2.06 -PROCESS/11_JANUARY_2009                              \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_162.54/1_1        \
-Origin/Tarawa_Kiribati                               \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_JAN_1986        \
-makePIX/FILE/8/Z20                            \
@-import/yourimage/dbnc_3_0_0_0/650_600/1,3_1,3                \
@-DN393/65/3CloudShadow                                          \
@-DN562/476/5BrightBeach                                      \
@-DN185/550/5Lsw                         \
@Lsw030.5/016.7/008.3                                          \
-makeLand/LsM162.6_154.6/Lsw16.7_8.3/offset5_slope1.2            \
@-Recode/0_InChannel_1_into_239_OutChannel_4NoDataPixels        \
@-Recode/0_InChannel_2_into_239_OutChannel_4NoDataPixels        \
@-Recode/0_InChannel_3_into_239_OutChannel_4NoDataPixels        \
@-Recode/0_InChannel_4_into_1_OutChannel_4MarinePixels            \
@-Recode/248_InChannel_4_into_21_OutChannel_4/mSOIL.shp            \
@-Recode/GT18_InChannel_3_into_233_OutChannel_4/waves.shp        \
@-Recode/LT30_InChannel_1_into_234_OutChannel_4/cloud_shadow.shp    \
@-Recode/LT15_InChannel_2_into_234_OutChannel_4/cloud_shadow.shp    \
@-Recode/LT08_InChannel_3_into_234_OutChannel_4/cloud_shadow.shp    \
@-Recode/GT12_InChannel_3_into_234_OutChannel_4/cloud_shadow.shp    \
@-DeglintRbas/0.5/1,3_14/1_255/500_650_10_360                     \
@-Recode/LT29_InChannel_22_into_240_OutChannel_4/deep.shp        \
@-Recode/1_InChannel_4_into_240_OutChannel_4/deep.shp            \
@-Recode/1_InChannel_4_into_2_OutChannel_4/mask_2.shp              \

#1-Deglinting_Linearizing
nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-Lsw030.2/016.4/008.3                                      \
-La0030.2/016.4/008.3                                    \
-LsM175.8/162.6/154.6                        \
-DeglintRBa/0.5/1,3_14/1_255/500_650_10_360            \

-DeglintRBa/0.5/1,3_0/1_255/500_650_10_360                \
-DeglintRBa/0.5/1,3_14/1_255/500_650_10_360 -E50/600/50/550                \
-DeglintRBa/0.5/1,3_14/1_255/500_650_10_360 -Smooth_1d/Smart+ -E100/550/100/500 \
-DeglintRBa/0.5/1,3_14/1_255/500_650_10_360 -Smooth_1D/Smart+ -E150/500/150/450

#2-Extraction of calibration data into textfile tarawa-subset_m0.cal
#choose either mBPL_1 for extraction in whole image
#or mBPL_2 for extraction excluding mSE=1
\rm *cal; nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-Lsw030.2/016.4/008.3                                      \
-La0030.2/016.4/008.3                                    \
-LsM175.8/162.6/154.6                        \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-Extractv/3Max255/mBPL_2/mSOIL_21                          \

#3-First Calibration under mask=2: read textfile tarawa-subset_m0.cal
#to produce and run scriptfile "calibration.sh"
nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-M@000001/00002/00003                    \
-Lsw030.2/016.4/008.3                                      \
-La0030.2/016.4/008.3                                    \
-LsM175.8/162.6/154.6                        \
-KK/1_2_0.300/4.42/500_600_700                \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001        \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-extractv/3Max255/mBPL_2/mSOIL_21                          \
-CalibrateV/BdSMpZ/3_2_1/BDh_12_23                \

#3-First Calibration under mask=2 modified
#nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
@CPf159.0/100.0/015.0                    \
-CPf161.0/098.0/015.0                    \
-M@000001/00002/00003                    \
-Lsw030.2/016.4/008.3                                      \
-La0030.2/016.4/008.3                                    \
-La0028.2/016.4/008.3                    \
-LsM175.8/162.6/154.6                        \
-LsM189.6/173.6/164.2                    \
-KK/1_2_0.300/4.42/500_600_700                \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001        \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-extractv/3Max255/mBPL_2/mSOIL_21                          \
-CalibrateV/BdSMpZ/3_2_1/BDh_12_23                \

#4-First Modeling based on First Calibration
nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-CPf161.0/098.0/015.0                    \
-M@000001/00002/00003                    \
-Lsw030.2/016.4/008.3                                      \
-La0028.2/016.4/008.3                    \
-LsM189.6/173.6/164.2                    \
-Lm001.00/04.00/005.0                        \
-KK/1_2_0.300/4.42/500_600_700                \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001        \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-extractv/3Max255/mBPL_2/mSOIL_21                          \
-calibrateV/BdSMpZ/3_2_1/BDh_12_23                \
-Smooth_3D/Smart+    -Model/mask_2        \
-M0000001/00002/00003                                          \
-B/tclne_2.0/170_100/1/1.00                           \
-Lm001.00/04.0/005.0                        \
-Smooth_3D/Smart+    -Model/mask_2                            \

-E1/260/1/440                         \

@-LL10                                \
@-d1/100/12/14                            \
-DD188/327                        \

#5-Second Calibration for the whole image: read textfile tarawa-subset_m0.cal
nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-CPf161.0/098.0/015.0                   \
-M@000001/00002/00003                   \
-Lsw030.2/016.4/008.3                                      \
-La0028.2/016.4/008.3                   \
-LsM189.6/173.6/164.2                   \
-Lm001.00/04.00/005.0                        \
-KK/1_2_0.300/4.42/500_600_700               \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001       \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-extractv/3Max255/mBPL_1/mSOIL_21                          \
-calibrateV/BdSMpZ/3_2_1/BDh_12_23               \
-M0000001/00002/00003                                          \
-B/tclne_2.0/170_100/1/1.00                           \
-Lm001.00/04.p/005.0                        \
-smooth_3D/Smart+    -Model/mask_2                            \
-DCAL1/3_11                            \

#Add -CP... arguments
#nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_150.56/1_600    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
-URL/file:///home/ymorel/RSPwebsite/website/                \
-CP0202.0/152.0/048.0                        \
-CP0180.3/108.7/014.8_Z=0.75m                    \
-M@000001/00002/00003                    \
-Lsw030.2/016.4/008.3                                      \
-La0028.2/016.4/008.3                    \
-LsM189.6/173.6/164.2                    \
-LsM213.8/197.2/187.6_CoefLM=1.150                \
-Lm001.00/04.00/005.0                        \
-KK/1_2_0.300/4.42/500_600_700                \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001        \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360                \
-extractv/3Max255/mBPL_1/mSOIL_21                          \
-CalibrateV/BdSMpZ/3_2_1/BDh_12_23                \
-M0000001/00002/00003                                          \
-B/tclne_2.0/170_100/1/1.00                           \
-Lm001.00/04.p/005.0                        \
-smooth_3D/Smart+    -Model/mask_2                            \
-dCAL1/3_11                            \

#6-Final Modeling
#-NOTE: A nice SPOT XS study case for glinted and cloudy image,
#and for the BPL using the NIR band.
nice -20 ./4SM.2.06 -PROCESS/11_JAN_2009                     \
-dB/PCI/tarawa-subset/27_1_0_0/3_1/650_600/714.5_162.54/1_1    \
-Origin/Tarawa_Kiribati                           \
-MIS/Tarawa/Kiribati/SPOT/XS/NA/UTM_19_008/.02_.02/01_NA_1986    \
@-URL/file:///FullPathOfYourOwnURL                \
-M0000001/00002/00003                                          \
-CP0202.0/152.0/048.0                        \
-CP0180.3/108.7/014.8_Z=0.75m                    \
-Lsw030.2/016.4/008.3                                      \
-La0028.2/016.4/008.3                    \
-LsM175.8/162.6/154.6                        \
-LsM189.6/173.6/164.2                        \
-LsM213.8/197.2/187.6_CoefLM=1.150                \
-Lm001.00/04.0p/005.0                        \
-KK/1_2_0.300/4.42/500_600_700 @type_OIII+.21             \
-Z/1.18/.1/0.00/0.0/1.0/PAN_1_3/sIG_2w5/N_1/1.0001        \
@-B/tclne_2.0/200_100/1/1.15                           \
@-B/tclne_2.0/200_100/1/1.00                           \
-B/tclne_2.0/150_040/1/1.00                               \
-deglintRBa/0.5/1,3_14/1_255/500_650_10_360               \
-extractv/3Max255/mBPL_1/mSOIL_21                      \
-calibrateV/BdSNpZ/3_2_1/BDh_12_23                \
-Smooth_3D/Smart+    -Model/mask_0                \